IHMValidation

Documentation

  • Usage
    • PDB-IHM Validation System
    • Local deployment
      • Building runtime image
      • Running the pipeline
    • Interpreting the reports
  • API
    • ihm_validation package
      • Submodules
      • ihm_validation.cx module
      • ihm_validation.em module
      • ihm_validation.excludedvolume module
      • ihm_validation.format_checker module
        • FileFormat
        • check_all_exception()
        • check_all_log()
        • check_atom_names_chimerax()
        • check_entities_histidines()
        • check_file_exception()
        • check_file_format()
        • check_file_log()
        • check_models()
        • detect_format()
        • parse_ihm_cif()
        • validate_cif_against_dictionary()
        • validate_ihmcif()
        • validate_mmcif()
      • ihm_validation.futures module
        • CXMSValidator
        • StereoChemistryValidator
        • Validator
        • get_hierarchy_from_atoms()
        • get_hierarchy_from_model()
        • is_model_atomic()
        • is_model_cg()
        • is_model_mixed()
      • ihm_validation.generate_static_html_pages module
      • ihm_validation.get_plots module
      • ihm_validation.ihm_validator module
      • ihm_validation.images module
      • ihm_validation.mmcif_io module
      • ihm_validation.molprobity module
      • ihm_validation.molprobity_convert module
        • get_atom_tuple()
        • rota_rama_result_to_tuple()
      • ihm_validation.precision module
      • ihm_validation.report module
      • ihm_validation.sas module
      • ihm_validation.sas_plots module
      • ihm_validation.utility module
      • Module contents

References

  • PDB-IHM Validation System
  • Validation Reports
  • PDB-IHM
  • PDB-IHM Deposition System
IHMValidation
  • Search

© Copyright 2025, Arthur Zalevsky, Sai Ganesan, Benjamin M. Webb, Brinda Vallat.

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